arcC protein (Yersinia intermedia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

arcC

arcC: carbamate kinase; Belongs to the carbamate kinase family. (300 aa)

Predicted Functional Partners:

argF

0.996

arcA

0.985

glnA

0.911

gdhA

0.904

carB

0.900

carA

0.900

glsA

0.900

glsA-2

0.900

pyrB

0.868

pyrI

0.845

Your Current Organism:

Yersinia intermedia

NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
arcA	arcC	CH53_1154	CH53_57	arcA: arginine deiminase.	arcC: carbamate kinase; Belongs to the carbamate kinase family.	0.985
arcA	argF	CH53_1154	CH53_1242	arcA: arginine deiminase.	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	0.996
arcC	arcA	CH53_57	CH53_1154	arcC: carbamate kinase; Belongs to the carbamate kinase family.	arcA: arginine deiminase.	0.985
arcC	argF	CH53_57	CH53_1242	arcC: carbamate kinase; Belongs to the carbamate kinase family.	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	0.996
arcC	carA	CH53_57	CH53_1066	arcC: carbamate kinase; Belongs to the carbamate kinase family.	Carbamoyl-phosphate synthase small chain; Belongs to the CarA family.	0.900
arcC	carB	CH53_57	CH53_1065	arcC: carbamate kinase; Belongs to the carbamate kinase family.	Carbamoyl-phosphate synthase large chain; Belongs to the CarB family.	0.900
arcC	gdhA	CH53_57	CH53_1608	arcC: carbamate kinase; Belongs to the carbamate kinase family.	NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.904
arcC	glnA	CH53_57	CH53_1809	arcC: carbamate kinase; Belongs to the carbamate kinase family.	glnA: glutamine synthetase, type I.	0.911
arcC	glsA	CH53_57	CH53_2580	arcC: carbamate kinase; Belongs to the carbamate kinase family.	Gln_ase: glutaminase A; Belongs to the glutaminase family.	0.900
arcC	glsA-2	CH53_57	CH53_46	arcC: carbamate kinase; Belongs to the carbamate kinase family.	Gln_ase: glutaminase A; Belongs to the glutaminase family.	0.900
arcC	pyrB	CH53_57	CH53_2237	arcC: carbamate kinase; Belongs to the carbamate kinase family.	Asp_carb_tr: aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.	0.868
arcC	pyrI	CH53_57	CH53_2236	arcC: carbamate kinase; Belongs to the carbamate kinase family.	Aspartate carbamoyltransferase, regulatory subunit; Involved in allosteric regulation of aspartate carbamoyltransferase.	0.845
argF	arcA	CH53_1242	CH53_1154	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	arcA: arginine deiminase.	0.996
argF	arcC	CH53_1242	CH53_57	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	arcC: carbamate kinase; Belongs to the carbamate kinase family.	0.996
argF	carA	CH53_1242	CH53_1066	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Carbamoyl-phosphate synthase small chain; Belongs to the CarA family.	0.958
argF	carB	CH53_1242	CH53_1065	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Carbamoyl-phosphate synthase large chain; Belongs to the CarB family.	0.980
argF	pyrB	CH53_1242	CH53_2237	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Asp_carb_tr: aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.	0.867
argF	pyrI	CH53_1242	CH53_2236	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Aspartate carbamoyltransferase, regulatory subunit; Involved in allosteric regulation of aspartate carbamoyltransferase.	0.868
carA	arcC	CH53_1066	CH53_57	Carbamoyl-phosphate synthase small chain; Belongs to the CarA family.	arcC: carbamate kinase; Belongs to the carbamate kinase family.	0.900
carA	argF	CH53_1066	CH53_1242	Carbamoyl-phosphate synthase small chain; Belongs to the CarA family.	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	0.958

page 1 of 4

Server load: low (12%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About