STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
srlDSorbitol-6-phosphate 2-dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (259 aa)    
Predicted Functional Partners:
gutB
PTS system glucitol/sorbitol-specific IIA component family protein.
 
 
  0.978
srlA
Glucitol/sorbitol permease IIC component.
 
 
  0.975
srlE
Glucitol/sorbitol-specific phosphotransferase enzyme IIB component.
 
 
  0.969
sorE
Zinc-binding dehydrogenase family protein.
 
 
 0.936
rpe-2
Rpe: ribulose-phosphate 3-epimerase.
  
 
  0.912
pfkA
6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.
    
 0.909
scrK_1
pfkB carbohydrate kinase family protein; Belongs to the carbohydrate kinase PfkB family.
    
  0.903
scrK_2
pfkB carbohydrate kinase family protein.
    
  0.903
manA
manA: mannose-6-phosphate isomerase, class I; Belongs to the mannose-6-phosphate isomerase type 1 family.
   
 
 0.901
fbp
Fructose-1-6-bisphosphatase family protein; Belongs to the FBPase class 1 family.
     
 0.900
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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