Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ylbAHypothetical protein. (261 aa)    
Predicted Functional Partners:
allC
allC: allantoate amidohydrolase.
 
 
 0.991
allD
allD: ureidoglycolate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
 
 
 0.984
hyuC
Hydantase: amidase, hydantoinase/carbamoylase family protein.
 
 
 0.967
allA
Ureidoglycolate hydrolase.
 
  
 0.949
pucG
Putative ureidoglycine-glyoxylate aminotransferase.
 
  
  0.932
allB
Allantoinase; Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring; Belongs to the metallo-dependent hydrolases superfamily. Allantoinase family.
 
  
 0.847
ncs1
Ncs1: NCS1 nucleoside transporter family protein.
 
     0.783
CH53_59
Hypothetical protein.
 
    0.727
fdrA
Protein fdrA.
 
  
 0.726
CH53_58
Hypothetical protein.
 
     0.627
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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