STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CH53_636Alpha-2-macroglobulin family protein; Protects the bacterial cell from host peptidases. (1674 aa)    
Predicted Functional Partners:
pbpC
PBP_1c: penicillin-binding protein 1C.
 
   
 0.949
creD
Inner membrane CreD family protein.
  
     0.544
CH53_4002
Putative myosin light chain kinase, smooth muscle.
 
  
 0.539
nrdR
Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
    
   0.512
eco
Ecotin family protein; General inhibitor of pancreatic serine proteases: inhibits chymotrypsin, trypsin, elastases, factor X, kallikrein as well as a variety of other proteases.
  
   
 0.492
CH53_634
beta/Gamma crystallin family protein.
 
     0.459
psaB
type_VI_ompA: type VI secretion system peptidoglycan-associated domain.
   
    0.430
creC
HAMP domain protein.
  
     0.429
CH53_3703
Hypothetical protein.
  
     0.411
pgpB
PAP2 superfamily protein.
 
     0.411
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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