STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prnAutotrans_barl: outer membrane autotransporter barrel domain protein. (1156 aa)    
Predicted Functional Partners:
yapE
Autotrans_barl: outer membrane autotransporter barrel domain protein.
  
   
 0.789
ydgC
Inner membrane protein ydgC.
  
     0.717
fimC_7
Hypothetical protein; Pili and flagellar-assembly chaperone, PapD N-terminal domain protein.
  
    0.655
CH53_4071
Putative amidase/amidotransferase.
  
     0.637
CH53_2453
papC N-terminal domain protein.
  
    0.609
fimD_3
papC N-terminal domain protein.
  
    0.609
yhcP_1
Fusaric acid resistance family protein.
  
     0.603
focC_5
Hypothetical protein; Pili and flagellar-assembly chaperone, PapD N-terminal domain protein.
  
    0.571
icsA
Autotrans_barl: outer membrane autotransporter barrel domain protein.
  
   
 0.563
focC_4
Hypothetical protein; Pili and flagellar-assembly chaperone, PapD N-terminal domain protein.
  
    0.554
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.