Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
qseGyfhG lipofamily protein. (394 aa)    
Predicted Functional Partners:
glrK
HAMP domain protein.
 
 
 
 0.980
qseF
AAA domain family protein.
  
  
 0.789
flgM
flgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM.
  
     0.684
glnB
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
     
 0.655
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
     
 0.646
CH53_638
sseB C-terminal domain protein.
  
     0.622
ycfL
Hypothetical protein.
  
     0.610
tomB
Biofilm formation regulator YbaJ family protein.
  
     0.567
truA
tRNA pseudouridine(38-40) synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
    0.539
pspG
phageshock_pspG: phage shock protein G.
  
     0.536
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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