STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yplAHypothetical protein. (322 aa)    
Predicted Functional Partners:
CH53_691
Ankyrin repeat family protein.
 
   
 0.903
CH53_634
beta/Gamma crystallin family protein.
 
    0.780
psaB
type_VI_ompA: type VI secretion system peptidoglycan-associated domain.
  
  
 0.748
fhaB
Hypothetical protein; adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein.
 
   
 0.747
CH53_1156
O-Antigen ligase family protein.
  
     0.714
hcp1
VI_effect_Hcp1: type VI secretion system effector, Hcp1 family protein.
 
  
 0.712
CH53_81
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
  
     0.710
CH53_2540
impA-related N-terminal family protein.
 
  
 0.689
rcsB_2
Bacterial regulatory s, luxR family protein.
  
     0.688
CH53_4397
O-Antigen ligase family protein.
  
     0.681
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.