STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
allAUreidoglycolate hydrolase. (160 aa)    
Predicted Functional Partners:
ylbA
Hypothetical protein.
 
  
  0.936
gcl
Glyox_carbo_lig: glyoxylate carboligase; Belongs to the TPP enzyme family.
 
  
 0.909
allD
allD: ureidoglycolate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
     
 0.904
ureB
Urease subunit beta; Belongs to the urease beta subunit family.
    
 0.903
ureA
Urease subunit gamma; Belongs to the urease gamma subunit family.
    
  0.903
ureC
Urease_alph: urease, alpha subunit.
    
  0.902
aceB
malate_syn_A: malate synthase A.
    
 0.826
aceA
Isocit_lyase: isocitrate lyase.
     
 0.807
ghrB
Glyoxylate/hydroxypyruvate reductase B; Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. GhrB subfamily.
     
  0.800
ghrA
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein; Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively.
     
  0.800
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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