STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ureAUrease subunit gamma; Belongs to the urease gamma subunit family. (100 aa)    
Predicted Functional Partners:
ureC
Urease_alph: urease, alpha subunit.
 0.999
ureB
Urease subunit beta; Belongs to the urease beta subunit family.
 0.999
ureD
ureD urease accessory family protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
 
 0.988
ureF
ureF family protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
 
 0.950
allA
Ureidoglycolate hydrolase.
    
  0.902
ureG
Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
 
  
 0.874
ureE
Hypothetical protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.
 
  
 0.738
bar
Acetyltransferase family protein.
  
    0.662
yut
Urea_trans_yut: urea transporter.
 
   
 0.520
urtD
urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD.
 
  
 0.433
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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