STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CH53_77Hypothetical protein. (446 aa)    
Predicted Functional Partners:
lacZ_2
Glycosyl hydrolases 2 family protein; Belongs to the glycosyl hydrolase 2 family.
 
     0.930
bcsA_2
Cellulose synthase family protein.
 
    0.912
CH53_81
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
 
     0.845
CH53_87
Acyltransferase family protein.
 
 
   0.827
CH53_78
Hypothetical protein.
 
    
0.807
cheY_2
Stage II sporulation E family protein.
 
    0.791
CH53_83
Ant_ant_sig: anti-anti-sigma factor family protein; Belongs to the anti-sigma-factor antagonist family.
 
    0.790
barA_2
Sensory box protein.
 
   
 0.765
CH53_634
beta/Gamma crystallin family protein.
  
     0.687
CH53_79
Hypothetical protein.
 
    
0.656
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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