STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_787Hypothetical protein. (128 aa)    
Predicted Functional Partners:
CH53_779
Glycosyl transferase 2 family protein.
   
 0.930
hcl
AMP-binding enzyme family protein.
     0.855
CH53_786
Hypothetical protein; Beta-ketoacyl synthase, N-terminal domain protein.
 
     0.851
CH53_776
MMPL family protein.
 
     0.847
CH53_777
Outer membrane lipocarrier LolA family protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
     0.843
CH53_775
Hypothetical protein.
 
     0.839
CH53_788
O-methyltransferase family protein.
 
     0.834
CH53_785
Acyltransferase family protein.
 
     0.827
CH53_773
fabA-like domain protein.
 
     0.824
acpP_1
Phosphopantetheine attachment site family protein.
 
     0.815
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.