STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glgC_4Nucleotidyl transferase family protein. (387 aa)    
Predicted Functional Partners:
selB
selB: selenocysteine-specific translation elongation factor.
    
 0.966
CH53_3308
Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein.
  
 
 0.948
CH53_3307
GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase.
  
 
 0.926
gmhB
D,D-heptose 1,7-bisphosphate phosphatase.
 
 
 0.920
gmd
Gmd: GDP-mannose 4,6-dehydratase.
    
 0.918
CH53_83
Ant_ant_sig: anti-anti-sigma factor family protein; Belongs to the anti-sigma-factor antagonist family.
 
   
 0.805
cheY_2
Stage II sporulation E family protein.
 
     0.797
CH53_81
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
 
     0.780
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
0.732
rfbB
dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.711
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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