STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ycaD_1Major Facilitator Superfamily protein. (442 aa)    
Predicted Functional Partners:
yaaA
Hypothetical protein; Belongs to the UPF0246 family.
  
    0.806
deoR_1
Transcriptional regulator, putative.
       0.497
CH53_474
Hypothetical protein.
  
     0.486
ygaD
Protein YgaD; Belongs to the CinA family.
       0.456
CH53_2479
Thermostable hemolysin family protein.
  
     0.447
CH53_2481
Putative aMP-dependent synthetase and ligase.
  
    0.442
CH53_1548
Putative ATPases of the HSP70 class involved in cell division.
 
     0.423
CH53_2662
Type II secretion system (T2SS), K family protein.
  
     0.422
cirA_1
tonB-copper: TonB-dependent copper receptor.
  
     0.400
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.