STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_83Ant_ant_sig: anti-anti-sigma factor family protein; Belongs to the anti-sigma-factor antagonist family. (115 aa)    
Predicted Functional Partners:
CH53_81
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
 
 
 0.996
cheY_2
Stage II sporulation E family protein.
 
 
 0.996
barA_2
Sensory box protein.
 
  
 0.934
bvgS_2
His Kinase A domain protein.
 
  
 0.889
barA_1
HAMP domain protein.
 
  
 0.887
thiH
thiH: thiazole biosynthesis protein ThiH.
  
    0.878
flgE
flgEFG_subfam: flagellar hook-basal body family protein.
   
    0.874
flgJ
flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ.
   
    0.874
flgH
Flagellar L-ring family protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
   
    0.872
flgB
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
   
    0.869
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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