STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fmdAacetamidase/Formamidase family protein. (328 aa)    
Predicted Functional Partners:
yccX
Acylphosphatase family protein.
     
  0.900
CH53_859
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.797
amiR
ANTAR domain protein.
 
     0.752
amiC_2
urea_ABC_arch: urea ABC transporter, substrate-binding protein.
 
     0.748
livH_1
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.681
glnQ_1
ABC transporter family protein.
 
     0.669
livF_1
ABC transporter family protein.
 
   
 0.660
CH53_865
Carbon-nitrogen hydrolase family protein.
 
   
 0.612
amiC_1
Periplasmic binding domain protein.
 
     0.586
CH53_2441
Amidohydrolase family protein.
  
     0.520
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.