STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sorCSorbitol operon regulator. (319 aa)    
Predicted Functional Partners:
sorE
Zinc-binding dehydrogenase family protein.
 
   
 0.795
dhaK
dhaK1: dihydroxyacetone kinase, DhaK subunit.
     0.757
sorF
EIIA-man: PTS system, mannose/fructose/sorbose family, IIA component domain protein.
 
   
 0.717
gutB
PTS system glucitol/sorbitol-specific IIA component family protein.
 
     0.657
srlA
Glucitol/sorbitol permease IIC component.
 
     0.651
srlE
Glucitol/sorbitol-specific phosphotransferase enzyme IIB component.
 
     0.606
gutM
Glucitol operon activator family protein.
 
     0.521
CH53_4013
Hypothetical protein.
 
     0.452
sorB
Sorbose-specific phosphotransferase enzyme IIB component.
       0.449
lsrG
Autoinducer 2-degrading protein lsrG; Involved in the degradation of phospho-AI-2, thereby terminating induction of the lsr operon and closing the AI-2 signaling cycle. Catalyzes the conversion of (4S)-4-hydroxy-5- phosphonooxypentane-2,3-dione (P-DPD) to 3-hydroxy-5- phosphonooxypentane-2,4-dione (P-HPD); Belongs to the LsrG family.
 
  
 0.429
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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