STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sorBSorbose-specific phosphotransferase enzyme IIB component. (163 aa)    
Predicted Functional Partners:
sorF
EIIA-man: PTS system, mannose/fructose/sorbose family, IIA component domain protein.
 
 
 0.997
sorA
EII-Sor: PTS system, mannose/fructose/sorbose, IIC component family protein.
 
 0.994
sorM
EIID-AGA: PTS system, mannose/fructose/sorbose, IID component family protein.
 
 0.994
sorE
Zinc-binding dehydrogenase family protein.
  
 
  0.933
ptsH
Phosphocarrier protein HPr.
   
 0.915
agaC_1
PTS system sorbose-specific iic component family protein.
 
 
 0.907
agaC_2
PTS system sorbose-specific iic component family protein.
 
 
 0.907
manZ_1
EIID-AGA: PTS system, mannose/fructose/sorbose, IID component family protein.
 
 
 0.904
manZ_2
PTS system mannose/fructose/sorbose IID component family protein.
 
 
 0.904
manY
EII-Sor: PTS system, mannose/fructose/sorbose, IIC component family protein.
 
 
 0.904
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.