STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sorEZinc-binding dehydrogenase family protein. (416 aa)    
Predicted Functional Partners:
sorA
EII-Sor: PTS system, mannose/fructose/sorbose, IIC component family protein.
 
 
  0.960
sorM
EIID-AGA: PTS system, mannose/fructose/sorbose, IID component family protein.
  
 
  0.956
srlA
Glucitol/sorbitol permease IIC component.
 
  
  0.953
gutB
PTS system glucitol/sorbitol-specific IIA component family protein.
 
  
  0.949
srlE
Glucitol/sorbitol-specific phosphotransferase enzyme IIB component.
 
  
  0.945
sorF
EIIA-man: PTS system, mannose/fructose/sorbose family, IIA component domain protein.
  
 
 0.945
srlD
Sorbitol-6-phosphate 2-dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.936
sorB
Sorbose-specific phosphotransferase enzyme IIB component.
  
 
  0.933
sorC
Sorbitol operon regulator.
 
   
 0.725
nifJ
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase.
     
 0.698
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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