STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_883Isomerase/lactonizing enzyme; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (384 aa)    
Predicted Functional Partners:
dppA_1
Bacterial extracellular solute-binding s, 5 Middle family protein.
     0.762
gsiA_1
ABC transporter family protein.
 
     0.610
CH53_2950
SMP-30/Gluconolaconase/LRE-like region family protein.
 
   
 0.576
dppB_1
Binding--dependent transport system inner membrane component family protein.
 
    0.554
oppD_1
ABC transporter family protein.
 
    0.547
eda_2
Nitronate monooxygenase family protein.
 
   
 0.544
garL
2-dehydro-3-deoxyglucarate aldolase; Catalyzes the reversible retro-aldol cleavage of both 5-keto- 4-deoxy-D-glucarate and 2-keto-3-deoxy-D-glucarate to pyruvate and tartronic semialdehyde; Belongs to the HpcH/HpaI aldolase family. KDGluc aldolase subfamily.
 
  
 0.517
ddpC_1
Binding--dependent transport system inner membrane component family protein.
  
    0.481
CH53_1715
2-keto-3-deoxy-galactonokinase family protein.
 
  
 0.438
rhaM
L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose.
 
   
 0.409
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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