Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CH53_905Hypothetical protein. (532 aa)    
Predicted Functional Partners:
yqfB
ASCH domain protein; Belongs to the UPF0267 family.
  
     0.686
tadC
Type II secretion system (T2SS), F family protein.
  
     0.483
ogl
Oligogalacturonate lyase.
  
     0.450
crl
Sigma factor-binding protein crl; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family.
  
     0.436
CH53_904
Hypothetical protein.
       0.420
alaE
Hypothetical protein; Exports L-alanine; Belongs to the AlaE exporter family.
  
     0.412
CH53_788
O-methyltransferase family protein.
  
     0.408
baeS_2
HAMP domain protein.
  
     0.407
CH53_989
Hypothetical protein; Belongs to the UPF0231 family.
  
     0.407
ycdZ
Inner membrane protein ycdZ.
  
     0.405
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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