STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yadHInner membrane transport permease yadH. (256 aa)    
Predicted Functional Partners:
yadG
ABC transporter family protein.
  
 0.983
ydjA
Putative NAD(P)H nitroreductase ydjA.
  
  
 0.676
CH53_159
ycaO-type kinase domain protein.
  
  
 0.548
ccmA-8
ccmA: heme ABC exporter, ATP-binding protein CcmA.
  
  
 0.533
CH53_3310
ABC transporter family protein.
  
  
 0.533
gshA
Glu_cys_ligase: glutamate--cysteine ligase; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.
  
     0.521
can
Carbonic anhydrase 2; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
       0.501
CH53_3174
CAAX protease self-immunity family protein.
   
  
 0.500
sapF
Peptide transport system ATP-binding protein SapF.
  
  
 0.481
proW
Binding--dependent transport system inner membrane component family protein.
  
  
  0.457
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.