STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ampEProtein AmpE. (284 aa)    
Predicted Functional Partners:
ampD
N-acetylmuramoyl-L-alanine amidase family protein.
  
  
 0.821
CH53_744
Hypothetical protein.
  
     0.768
CH53_143
Fructosamine kinase family protein.
  
     0.758
nadC
nadC: nicotinate-nucleotide diphosphorylase; Belongs to the NadC/ModD family.
     
 0.756
pspG
phageshock_pspG: phage shock protein G.
  
     0.739
aaeX
Hypothetical protein.
  
     0.734
ynfB
Hypothetical protein; Belongs to the UPF0482 family.
  
     0.734
mzrA
Hypothetical protein; Modulates the activity of the EnvZ/OmpR two-component regulatory system, probably by directly modulating EnvZ enzymatic activity and increasing stability of phosphorylated OmpR.
  
     0.729
bssS
bssS family protein.
  
     0.727
CH53_1694
Hypothetical protein.
  
     0.712
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.