A0A0K0CWC9 protein (Angiostrongylus cantonensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0K0CWC9

GP-PDE domain-containing protein. (362 aa)

Predicted Functional Partners:

A0A0K0CZV8

0.893

A0A0K0D0X7

0.864

A0A0K0CVD0

0.863

A0A0K0D2V3

0.854

A0A0K0DGQ8

0.854

A0A0K0CYK9

0.853

A0A158P928

0.837

A0A0K0CZ54

0.817

A0A0K0CZI5

0.808

A0A0K0D0T1

0.808

Your Current Organism:

Angiostrongylus cantonensis

NCBI taxonomy Id: 6313
Other names: A. cantonensis, rat lungworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0K0CVD0	A0A0K0CWC9	Uncharacterized protein.	GP-PDE domain-containing protein.	0.863
A0A0K0CVD0	A0A0K0CZI5	Uncharacterized protein.	Uncharacterized protein.	0.801
A0A0K0CVD0	A0A0K0D0T1	Uncharacterized protein.	Uncharacterized protein.	0.801
A0A0K0CWC9	A0A0K0CVD0	GP-PDE domain-containing protein.	Uncharacterized protein.	0.863
A0A0K0CWC9	A0A0K0CYK9	GP-PDE domain-containing protein.	Uncharacterized protein.	0.853
A0A0K0CWC9	A0A0K0CZ54	GP-PDE domain-containing protein.	Uncharacterized protein.	0.817
A0A0K0CWC9	A0A0K0CZI5	GP-PDE domain-containing protein.	Uncharacterized protein.	0.808
A0A0K0CWC9	A0A0K0CZV8	GP-PDE domain-containing protein.	Uncharacterized protein.	0.893
A0A0K0CWC9	A0A0K0D0T1	GP-PDE domain-containing protein.	Uncharacterized protein.	0.808
A0A0K0CWC9	A0A0K0D0X7	GP-PDE domain-containing protein.	Phospholipase A(2).	0.864
A0A0K0CWC9	A0A0K0D2V3	GP-PDE domain-containing protein.	Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.	0.854
A0A0K0CWC9	A0A0K0DGQ8	GP-PDE domain-containing protein.	Uncharacterized protein.	0.854
A0A0K0CWC9	A0A158P928	GP-PDE domain-containing protein.	Uncharacterized protein.	0.837
A0A0K0CYK9	A0A0K0CWC9	Uncharacterized protein.	GP-PDE domain-containing protein.	0.853
A0A0K0CZ54	A0A0K0CWC9	Uncharacterized protein.	GP-PDE domain-containing protein.	0.817
A0A0K0CZI5	A0A0K0CVD0	Uncharacterized protein.	Uncharacterized protein.	0.801
A0A0K0CZI5	A0A0K0CWC9	Uncharacterized protein.	GP-PDE domain-containing protein.	0.808
A0A0K0CZI5	A0A0K0D0T1	Uncharacterized protein.	Uncharacterized protein.	0.746
A0A0K0CZI5	A0A0K0D0X7	Uncharacterized protein.	Phospholipase A(2).	0.748
A0A0K0CZI5	A0A158P928	Uncharacterized protein.	Uncharacterized protein.	0.766