Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EIC22794.1 | EIC22795.1 | Thi970DRAFT_00429 | Thi970DRAFT_00430 | Transposase; PFAM: Integrase core domain; manually curated; partial gene. | PFAM: TrbC/VIRB2 family. | 0.534 |
EIC22794.1 | EIC22796.1 | Thi970DRAFT_00429 | Thi970DRAFT_00431 | Transposase; PFAM: Integrase core domain; manually curated; partial gene. | Hypothetical protein. | 0.406 |
EIC22794.1 | EIC22797.1 | Thi970DRAFT_00429 | Thi970DRAFT_00432 | Transposase; PFAM: Integrase core domain; manually curated; partial gene. | PFAM: F pilus assembly Type-IV secretion system for plasmid transfer; TIGRFAM: type-IV secretion system protein TraC. | 0.406 |
EIC22794.1 | EIC22798.1 | Thi970DRAFT_00429 | Thi970DRAFT_00433 | Transposase; PFAM: Integrase core domain; manually curated; partial gene. | Hypothetical protein. | 0.406 |
EIC22794.1 | EIC22799.1 | Thi970DRAFT_00429 | Thi970DRAFT_00434 | Transposase; PFAM: Integrase core domain; manually curated; partial gene. | PFAM: Peptidase S26; TIGRFAM: signal peptidase I, bacterial type; Belongs to the peptidase S26 family. | 0.406 |
EIC22794.1 | EIC22800.1 | Thi970DRAFT_00429 | Thi970DRAFT_00435 | Transposase; PFAM: Integrase core domain; manually curated; partial gene. | PFAM: Type-F conjugative transfer system pilin assembly protein. | 0.406 |
EIC22794.1 | EIC22801.1 | Thi970DRAFT_00429 | Thi970DRAFT_00436 | Transposase; PFAM: Integrase core domain; manually curated; partial gene. | PFAM: TraU protein. | 0.406 |
EIC22794.1 | EIC22802.1 | Thi970DRAFT_00429 | Thi970DRAFT_00437 | Transposase; PFAM: Integrase core domain; manually curated; partial gene. | Hypothetical protein. | 0.406 |
EIC22795.1 | EIC22794.1 | Thi970DRAFT_00430 | Thi970DRAFT_00429 | PFAM: TrbC/VIRB2 family. | Transposase; PFAM: Integrase core domain; manually curated; partial gene. | 0.534 |
EIC22795.1 | EIC22796.1 | Thi970DRAFT_00430 | Thi970DRAFT_00431 | PFAM: TrbC/VIRB2 family. | Hypothetical protein. | 0.568 |
EIC22795.1 | EIC22797.1 | Thi970DRAFT_00430 | Thi970DRAFT_00432 | PFAM: TrbC/VIRB2 family. | PFAM: F pilus assembly Type-IV secretion system for plasmid transfer; TIGRFAM: type-IV secretion system protein TraC. | 0.588 |
EIC22795.1 | EIC22798.1 | Thi970DRAFT_00430 | Thi970DRAFT_00433 | PFAM: TrbC/VIRB2 family. | Hypothetical protein. | 0.568 |
EIC22795.1 | EIC22799.1 | Thi970DRAFT_00430 | Thi970DRAFT_00434 | PFAM: TrbC/VIRB2 family. | PFAM: Peptidase S26; TIGRFAM: signal peptidase I, bacterial type; Belongs to the peptidase S26 family. | 0.587 |
EIC22795.1 | EIC22800.1 | Thi970DRAFT_00430 | Thi970DRAFT_00435 | PFAM: TrbC/VIRB2 family. | PFAM: Type-F conjugative transfer system pilin assembly protein. | 0.581 |
EIC22795.1 | EIC22801.1 | Thi970DRAFT_00430 | Thi970DRAFT_00436 | PFAM: TrbC/VIRB2 family. | PFAM: TraU protein. | 0.586 |
EIC22795.1 | EIC22802.1 | Thi970DRAFT_00430 | Thi970DRAFT_00437 | PFAM: TrbC/VIRB2 family. | Hypothetical protein. | 0.579 |
EIC22795.1 | EIC22804.1 | Thi970DRAFT_00430 | Thi970DRAFT_00439 | PFAM: TrbC/VIRB2 family. | PFAM: Mating pair stabilisation protein TraN. | 0.413 |
EIC22796.1 | EIC22794.1 | Thi970DRAFT_00431 | Thi970DRAFT_00429 | Hypothetical protein. | Transposase; PFAM: Integrase core domain; manually curated; partial gene. | 0.406 |
EIC22796.1 | EIC22795.1 | Thi970DRAFT_00431 | Thi970DRAFT_00430 | Hypothetical protein. | PFAM: TrbC/VIRB2 family. | 0.568 |
EIC22796.1 | EIC22797.1 | Thi970DRAFT_00431 | Thi970DRAFT_00432 | Hypothetical protein. | PFAM: F pilus assembly Type-IV secretion system for plasmid transfer; TIGRFAM: type-IV secretion system protein TraC. | 0.773 |
page 1 of 6