STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIC22643.1Negative regulator of sigma E activity; PFAM: Anti sigma-E protein RseA, N-terminal domain; overlaps another CDS with the same product name. (264 aa)    
Predicted Functional Partners:
EIC22642.1
Negative regulator of sigma E activity; PFAM: MucB/RseB family; overlaps another CDS with the same product name.
  
 
 0.997
EIC22644.1
RNA polymerase sigma factor RpoE; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor RpoE; RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.994
EIC19570.1
PFAM: Stringent starvation protein B.
    
 
 0.944
EIC22639.1
Periplasmic serine protease, Do/DeqQ family; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family; Belongs to the peptidase S1C family.
  
 
 0.897
EIC22641.1
PFAM: Positive regulator of sigma(E), RseC/MucC.
  
  
 0.853
EIC23192.1
Trypsin-like serine protease with C-terminal PDZ domain; PFAM: Trypsin.
  
 
 0.807
EIC23354.1
Trypsin-like serine protease with C-terminal PDZ domain; PFAM: Trypsin.
  
 
 0.807
EIC23504.1
Periplasmic serine protease, Do/DeqQ family; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family; Belongs to the peptidase S1C family.
  
 
 0.807
EIC22777.1
Trypsin-like serine protease with C-terminal PDZ domain; PFAM: Trypsin; manually curated; partial gene; IMG reference gene:2508717987_SP.
  
 
 0.807
EIC19352.1
Trypsin-like serine protease with C-terminal PDZ domain; PFAM: Trypsin.
  
 
 0.807
Your Current Organism:
Thiorhodovibrio sp. 970
NCBI taxonomy Id: 631362
Other names: T. sp. 970
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