STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIC20768.1Uncharacterized protein involved in outer membrane biogenesis; PFAM: AsmA family. (1126 aa)    
Predicted Functional Partners:
EIC21249.1
DNA polymerase III epsilon subunit-like 3'-5' exonuclease; PFAM: DnaJ domain; Exonuclease.
  
     0.770
EIC22122.1
Putative membrane protein; PFAM: Fusaric acid resistance protein family.
  
    0.769
EIC20979.1
TPR repeat-containing protein.
  
     0.758
EIC23796.1
Hypothetical protein.
  
     0.674
EIC21496.1
PFAM: Rubrerythrin.
  
     0.576
EIC23977.1
Putative transcriptional regulator; PFAM: Prophage CP4-57 regulatory protein (AlpA).
  
    0.559
EIC21527.1
PFAM: Predicted periplasmic protein (DUF2092).
  
     0.556
EIC22810.1
Hypothetical protein.
 
     0.555
EIC21582.1
Hypothetical protein.
  
     0.538
EIC20769.1
Mg2+/Co2+ transporter; PFAM: Ion channel; CorA-like Mg2+ transporter protein.
       0.531
Your Current Organism:
Thiorhodovibrio sp. 970
NCBI taxonomy Id: 631362
Other names: T. sp. 970
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