STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N177_0060Hypothetical protein. (46 aa)    
Predicted Functional Partners:
N177_0712
NAD(P)H dehydrogenase (quinone).
    
 0.675
N177_1622
Putative glycine-sarcosine methyltransferase.
   
 0.622
N177_2330
Sarcosine oxidase alpha subunit.
     
 0.557
N177_3967
Sarcosine oxidase alpha subunit.
     
 0.557
N177_3961
Dimethylglycine dehydrogenase; Belongs to the GcvT family.
     
 0.514
N177_1395
Cytochrome P450 monooxygenase.
    
  0.451
N177_1530
Cytochrome P450.
    
  0.451
N177_1941
Hypothetical protein.
    
  0.451
N177_2944
5-aminolevulinate synthase.
  
 
 0.402
Your Current Organism:
Lutibaculum baratangense
NCBI taxonomy Id: 631454
Other names: L. baratangense AMV1, Lutibaculum baratangense AMV1, Phyllobacteriaceae bacterium AMV1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.