STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N177_0130Putrescine transport ATP-binding protein PotA; TCDB 3.A.1.11.1; Belongs to the ABC transporter superfamily. (366 aa)    
Predicted Functional Partners:
N177_0129
Ferric iron ABC transporter, permease protein.
 
  0.950
N177_4171
Oligopeptide transport ATP-binding protein OppD; TCDB 3.A.1.5.1.
 
    
0.902
N177_1101
Molybdenum transport system permease protein ModB; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
  0.842
N177_1883
Sulfate transport system permease protein CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
  
  0.826
N177_0128
Extracellular solute-binding protein, family 1.
 
 
  0.814
N177_0441
Permease protein of polyamine ABC transporter.
 
 
  0.736
N177_2981
Polyamine ABC transporter, permease protein.
 
 
  0.725
N177_2980
ABC transporter, membrane spanning protein.
 
  0.722
cysC
Sulfate adenylyltransferase subunit 1; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
    
  0.689
N177_0131
CAIB/BAIF family protein; Belongs to the CoA-transferase III family.
       0.658
Your Current Organism:
Lutibaculum baratangense
NCBI taxonomy Id: 631454
Other names: L. baratangense AMV1, Lutibaculum baratangense AMV1, Phyllobacteriaceae bacterium AMV1
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