Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
N177_0200 | N177_0202 | N177_0200 | N177_0202 | DNA polymerase III chi subunit. | Hypothetical protein. | 0.467 |
N177_0200 | N177_0203 | N177_0200 | N177_0203 | DNA polymerase III chi subunit. | Putative Membrane protein. | 0.728 |
N177_0200 | N177_0204 | N177_0200 | N177_0204 | DNA polymerase III chi subunit. | Permease. | 0.833 |
N177_0200 | lptD | N177_0200 | N177_0205 | DNA polymerase III chi subunit. | Outer membrane protein Imp, required for envelope biogenesis; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. | 0.799 |
N177_0200 | pepA | N177_0200 | N177_0201 | DNA polymerase III chi subunit. | Cytosol aminopeptidase PepA; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides. | 0.770 |
N177_0202 | N177_0200 | N177_0202 | N177_0200 | Hypothetical protein. | DNA polymerase III chi subunit. | 0.467 |
N177_0202 | N177_0203 | N177_0202 | N177_0203 | Hypothetical protein. | Putative Membrane protein. | 0.773 |
N177_0202 | N177_0204 | N177_0202 | N177_0204 | Hypothetical protein. | Permease. | 0.773 |
N177_0202 | lptD | N177_0202 | N177_0205 | Hypothetical protein. | Outer membrane protein Imp, required for envelope biogenesis; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. | 0.594 |
N177_0202 | pepA | N177_0202 | N177_0201 | Hypothetical protein. | Cytosol aminopeptidase PepA; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides. | 0.565 |
N177_0203 | N177_0200 | N177_0203 | N177_0200 | Putative Membrane protein. | DNA polymerase III chi subunit. | 0.728 |
N177_0203 | N177_0202 | N177_0203 | N177_0202 | Putative Membrane protein. | Hypothetical protein. | 0.773 |
N177_0203 | N177_0204 | N177_0203 | N177_0204 | Putative Membrane protein. | Permease. | 0.999 |
N177_0203 | N177_1235 | N177_0203 | N177_1235 | Putative Membrane protein. | Lipopolysaccharide ABC transporter, ATP-binding protein LptB. | 0.992 |
N177_0203 | N177_2279 | N177_0203 | N177_2279 | Putative Membrane protein. | 3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. | 0.706 |
N177_0203 | N177_3543 | N177_0203 | N177_3543 | Putative Membrane protein. | Lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.741 |
N177_0203 | lptD | N177_0203 | N177_0205 | Putative Membrane protein. | Outer membrane protein Imp, required for envelope biogenesis; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. | 0.953 |
N177_0203 | lpxA | N177_0203 | N177_3541 | Putative Membrane protein. | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.715 |
N177_0203 | lpxK | N177_0203 | N177_2280 | Putative Membrane protein. | Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.788 |
N177_0203 | pepA | N177_0203 | N177_0201 | Putative Membrane protein. | Cytosol aminopeptidase PepA; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides. | 0.639 |
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