STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N177_0223Hypothetical protein. (548 aa)    
Predicted Functional Partners:
N177_2212
4-oxalomesaconate hydratase.
 
  
 0.774
N177_1509
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase.
     
 0.710
N177_0224
TRAP-type C4-dicarboxylate transport system, periplasmic component.
       0.675
N177_3748
Putative siderophore biosynthesis protein.
 
   
 0.663
N177_3746
Hypothetical protein.
     0.616
N177_1698
Putative LysR family transcriptional regulatory protein.
  
     0.606
N177_1248
Putative transcriptional regulator protein, AsnC/GntR family.
  
     0.576
N177_0837
Transcriptional regulator, GntR family.
  
     0.574
N177_2344
Hypothetical protein.
  
     0.564
N177_3747
FldA protein.
  
 0.552
Your Current Organism:
Lutibaculum baratangense
NCBI taxonomy Id: 631454
Other names: L. baratangense AMV1, Lutibaculum baratangense AMV1, Phyllobacteriaceae bacterium AMV1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.