Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
N177_0228 | N177_0234 | Phosphate regulon transcriptional regulatory protein PhoB (SphR). | ATP binding histidine kinase. | 0.797 |
N177_0228 | N177_0235 | Phosphate regulon transcriptional regulatory protein PhoB (SphR). | Two-component system response regulator QseB. | 0.425 |
N177_0228 | N177_1493 | Phosphate regulon transcriptional regulatory protein PhoB (SphR). | Hypothetical protein. | 0.990 |
N177_0228 | N177_2582 | Phosphate regulon transcriptional regulatory protein PhoB (SphR). | Hypothetical protein. | 0.990 |
N177_0228 | N177_2810 | Phosphate regulon transcriptional regulatory protein PhoB (SphR). | Hypothetical protein. | 0.985 |
N177_0228 | N177_2992 | Phosphate regulon transcriptional regulatory protein PhoB (SphR). | Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s). | 0.825 |
N177_0234 | N177_0228 | ATP binding histidine kinase. | Phosphate regulon transcriptional regulatory protein PhoB (SphR). | 0.797 |
N177_0234 | N177_0235 | ATP binding histidine kinase. | Two-component system response regulator QseB. | 0.971 |
N177_0234 | N177_0236 | ATP binding histidine kinase. | Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase. | 0.884 |
N177_0234 | N177_0237 | ATP binding histidine kinase. | Putative thiol:disulfide interchange protein. | 0.754 |
N177_0234 | N177_1493 | ATP binding histidine kinase. | Hypothetical protein. | 0.981 |
N177_0234 | N177_2582 | ATP binding histidine kinase. | Hypothetical protein. | 0.957 |
N177_0234 | N177_2735 | ATP binding histidine kinase. | DNA-binding response regulator. | 0.853 |
N177_0234 | N177_2810 | ATP binding histidine kinase. | Hypothetical protein. | 0.905 |
N177_0234 | N177_2992 | ATP binding histidine kinase. | Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s). | 0.809 |
N177_0234 | N177_3573 | ATP binding histidine kinase. | Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | 0.980 |
N177_0235 | N177_0228 | Two-component system response regulator QseB. | Phosphate regulon transcriptional regulatory protein PhoB (SphR). | 0.425 |
N177_0235 | N177_0234 | Two-component system response regulator QseB. | ATP binding histidine kinase. | 0.971 |
N177_0235 | N177_0236 | Two-component system response regulator QseB. | Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase. | 0.699 |
N177_0235 | N177_0237 | Two-component system response regulator QseB. | Putative thiol:disulfide interchange protein. | 0.599 |
page 1 of 4