STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N177_0261Oxidoreductase, Gfo/Idh/MocA family. (387 aa)    
Predicted Functional Partners:
N177_0262
Inosose isomerase.
 
 
 0.987
N177_0259
Ribose ABC transport system, permease protein RbsC; TCDB 3.A.1.2.1; Belongs to the binding-protein-dependent transport system permease family.
    0.868
N177_0260
Ribose ABC transport system, ATP-binding protein RbsA; TCDB 3.A.1.2.1.
 
  
 0.824
N177_0258
Ribose ABC transporter, periplasmic ribose-binding protein RbsB; TCDB 3.A.1.2.1.
 
    0.811
N177_0163
Xylose isomerase domain protein TIM barrel.
  
 
 0.774
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
 
  
 0.747
N177_0265
Putative Xylose regulator from LacI family.
 
    0.702
N177_1231
NAD-dependent epimerase/dehydratase.
   
 
  0.669
N177_3822
Miscellaneous.
   
 
  0.669
xylB
Xylulose kinase.
 
  
 0.653
Your Current Organism:
Lutibaculum baratangense
NCBI taxonomy Id: 631454
Other names: L. baratangense AMV1, Lutibaculum baratangense AMV1, Phyllobacteriaceae bacterium AMV1
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