STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N177_0454ABC transporter, periplasmic spermidine putrescine-binding protein PotD; TCDB 3.A.1.11.1. (348 aa)    
Predicted Functional Partners:
N177_0452
Spermidine Putrescine ABC transporter permease component potC; TCDB _3.A.1.11.1.
 
 
  0.972
N177_0453
Spermidine Putrescine ABC transporter permease component PotB; TCDB 3.A.1.11.1.
 
 
  0.968
N177_3421
Spermidine Putrescine ABC transporter permease component potC; TCDB _3.A.1.11.1.
 
 
  0.885
N177_3420
Spermidine Putrescine ABC transporter permease component PotB; TCDB 3.A.1.11.1.
 
 
  0.870
potA-3
Putrescine transport ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
  0.843
N177_2981
Polyamine ABC transporter, permease protein.
 
 
  0.773
N177_2980
ABC transporter, membrane spanning protein.
 
 
  0.583
N177_0441
Permease protein of polyamine ABC transporter.
  
 
  0.503
N177_0455
D-mannonate oxidoreductase; Belongs to the mannitol dehydrogenase family.
       0.485
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
       0.485
Your Current Organism:
Lutibaculum baratangense
NCBI taxonomy Id: 631454
Other names: L. baratangense AMV1, Lutibaculum baratangense AMV1, Phyllobacteriaceae bacterium AMV1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.