STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N177_0602Manganese ABC transporter, ATP-binding protein SitB. (301 aa)    
Predicted Functional Partners:
N177_0600
Manganese ABC transporter, inner membrane permease protein SitD.
 0.996
N177_0601
Manganese ABC transporter, inner membrane permease protein SitC.
 0.996
N177_0603
Manganese ABC transporter, periplasmic-binding protein SitA; Belongs to the bacterial solute-binding protein 9 family.
 
 
 0.995
N177_3718
Zinc ABC transporter, inner membrane permease protein ZnuB.
 
 0.942
N177_3720
Zinc ABC transporter, periplasmic-binding protein ZnuA.
 
 
 0.923
N177_0300
Putative zinc-binding lipoprotein ZinT.
  
 
 0.902
fur
Manganese uptake regulation protein MUR; Belongs to the Fur family.
 
  
 0.693
N177_1101
Molybdenum transport system permease protein ModB; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
   
 0.586
ccmC
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.
  
 
  0.517
fur-3
Zinc uptake regulation protein ZUR; Belongs to the Fur family.
 
  
 0.500
Your Current Organism:
Lutibaculum baratangense
NCBI taxonomy Id: 631454
Other names: L. baratangense AMV1, Lutibaculum baratangense AMV1, Phyllobacteriaceae bacterium AMV1
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