STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N177_1053P-hydroxybenzoate hydroxylase. (389 aa)    
Predicted Functional Partners:
N177_3289
Protocatechuate 3,4-dioxygenase alpha chain.
 
  
 0.935
N177_3290
Protocatechuate 3,4-dioxygenase beta chain.
 
  
 0.935
N177_1052
Hypothetical protein.
 
   
 0.863
N177_4195
4-carboxymuconolactone decarboxylase.
 
 
 0.816
N177_1054
Putative VANILLIN dehydrogenase oxidoreductase protein; Belongs to the aldehyde dehydrogenase family.
 
 
  0.758
N177_4196
Beta-ketoadipate enol-lactone hydrolase.
  
 
 0.738
N177_1509
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase.
  
  
 0.719
N177_1622
Putative glycine-sarcosine methyltransferase.
   
 0.704
N177_2789
Glyoxalase family protein.
    
 0.704
N177_4197
3-carboxy-cis,cis-muconate cycloisomerase.
 
   
 0.691
Your Current Organism:
Lutibaculum baratangense
NCBI taxonomy Id: 631454
Other names: L. baratangense AMV1, Lutibaculum baratangense AMV1, Phyllobacteriaceae bacterium AMV1
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