STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N177_1251TRAP dicarboxylate transporter- DctP subunit. (331 aa)    
Predicted Functional Partners:
N177_1252
Hypothetical protein.
 
     0.904
N177_1253
TRAP dicarboxylate transporter, DctM subunit, unknown substrate 5.
 
    0.899
N177_1249
N-methylhydantoinase A.
       0.655
N177_1250
N-methylhydantoinase B.
       0.655
N177_4091
TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
     0.630
N177_1254
Hypothetical protein.
 
     0.622
N177_1255
Hypothetical protein.
 
     0.600
N177_4093
TRAP-type C4-dicarboxylate transport system, large permease component.
  
    0.597
N177_0073
TRAP dicarboxylate transporter- DctP subunit.
  
     0.583
N177_0075
TRAP-type C4-dicarboxylate transport system, large permease component.
  
    0.551
Your Current Organism:
Lutibaculum baratangense
NCBI taxonomy Id: 631454
Other names: L. baratangense AMV1, Lutibaculum baratangense AMV1, Phyllobacteriaceae bacterium AMV1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.