STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N177_1578Histidine ABC transporter, permease protein HisQ; TCDB 3.A.1.3.1. (234 aa)    
Predicted Functional Partners:
N177_0522
Amino acid ABC transporter, periplasmic amino acid-binding protein; Belongs to the bacterial solute-binding protein 3 family.
 0.983
N177_3804
Amino acid ABC transporter, periplasmic amino acid-binding portion; Belongs to the bacterial solute-binding protein 3 family.
 0.979
N177_1580
Histidine ABC transporter, ATP-binding protein HisP; TCDB 3.A.1.3.1.
 
 0.969
N177_1577
Polar amino acid uptake family ABC transporter, permease protein.
 
 
0.959
N177_1579
Amino acid ABC transporter, binding protein; Belongs to the bacterial solute-binding protein 3 family.
 0.937
N177_0520
Amino acid ABC transporter, permease protein.
 
 
0.838
N177_1002
Extracellular solute-binding protein, family 3.
 0.835
N177_3806
ABC-type polar amino acid transport system, ATPase component.
  
  0.818
N177_1067
Glutamine ABC transporter, ATP-binding protein.
  
  0.816
N177_2403
Amino acid ABC transporter, ATP-binding protein.
  
  0.814
Your Current Organism:
Lutibaculum baratangense
NCBI taxonomy Id: 631454
Other names: L. baratangense AMV1, Lutibaculum baratangense AMV1, Phyllobacteriaceae bacterium AMV1
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