STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N177_2136N-acetyl-L,L-diaminopimelate deacetylase. (395 aa)    
Predicted Functional Partners:
N177_2700
Glutamate synthase [NADPH] large chain.
    
  0.790
N177_2138
Dipeptide transport system permease protein DppC; TCDB 3.A.1.5.2.
       0.567
N177_2139
Putative transport system permease protein.
       0.567
N177_2137
Oligopeptide transport ATP-binding protein OppD; TCDB 3.A.1.5.1; Belongs to the ABC transporter superfamily.
       0.566
dapD
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.
 
  
 0.498
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
    
 0.487
N177_2140
Putative gluthatione transporter,solute-binding component.
   
   0.479
N177_2135
Glucans biosynthesis protein D precursor; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).
       0.468
N177_3960
Membrane alanine aminopeptidase N.
   
 
  0.418
N177_1681
Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit B.
  
     0.405
Your Current Organism:
Lutibaculum baratangense
NCBI taxonomy Id: 631454
Other names: L. baratangense AMV1, Lutibaculum baratangense AMV1, Phyllobacteriaceae bacterium AMV1
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