STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N177_2137Oligopeptide transport ATP-binding protein OppD; TCDB 3.A.1.5.1; Belongs to the ABC transporter superfamily. (579 aa)    
Predicted Functional Partners:
N177_2239
Putative oligopeptide ABC transporter, permease component.
 
 0.985
N177_2138
Dipeptide transport system permease protein DppC; TCDB 3.A.1.5.2.
 
  0.983
N177_1684
Dipeptide transport system permease protein DppC; TCDB 3.A.1.5.2.
 
  0.950
N177_1710
Putative glutathione transporter, permease component; Overlaps CDS with the same product name.
 
  0.947
N177_2139
Putative transport system permease protein.
 
  0.937
N177_2427
Dipeptide transport system permease protein DppC; TCDB 3.A.1.5.2.
 
  0.931
N177_0385
Dipeptide transport system permease protein DppC; TCDB 3.A.1.5.2.
 
  0.914
N177_2997
Dipeptide transport system permease protein DppC; TCDB 3.A.1.5.2.
 
  0.911
N177_4170
Dipeptide transport system permease protein DppC; TCDB 3.A.1.5.2.
 
  0.895
N177_2602
Dipeptide transport system permease protein DppC; TCDB 3.A.1.5.2.
 
  0.882
Your Current Organism:
Lutibaculum baratangense
NCBI taxonomy Id: 631454
Other names: L. baratangense AMV1, Lutibaculum baratangense AMV1, Phyllobacteriaceae bacterium AMV1
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