STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N177_22101-aminocyclopropane-1-carboxylate deaminase. (353 aa)    
Predicted Functional Partners:
N177_2211
Aspartate racemase.
 
     0.941
N177_2209
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.771
N177_1446
Rhodanese-related sulfurtransferase.
  
 
  0.761
N177_3060
Indolepyruvate ferredoxin oxidoreductase, alpha and betaprotein.
     
 0.663
N177_3407
Cystathionine beta-lyase.
     
 0.568
metZ
O-acetylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
     
 0.440
N177_2931
Cystathionine gamma-lyase.
     
 0.440
Your Current Organism:
Lutibaculum baratangense
NCBI taxonomy Id: 631454
Other names: L. baratangense AMV1, Lutibaculum baratangense AMV1, Phyllobacteriaceae bacterium AMV1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.