STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N177_2355Transcriptional regulator, AraC family. (310 aa)    
Predicted Functional Partners:
N177_2700
Glutamate synthase [NADPH] large chain.
    
  0.736
N177_3527
Transcriptional regulator, AraC family.
  
   0.733
N177_2333
Putative transcriptional regulator AraC/XylS.
  
   0.709
N177_2356
cobalamin/Fe3+-siderophores transport system, secreted component.
 
    0.632
N177_2359
The iron-vibriobactin/enterobactin uptake porter.
 
    0.626
N177_2354
Ferrichrome-iron receptor.
  
   
 0.605
N177_2358
ABC-type Fe3+-siderophore transport system, permease 2 component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
    0.592
N177_2357
Transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
    0.588
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.540
N177_0951
Ferrichrome-iron receptor.
 
   
 0.492
Your Current Organism:
Lutibaculum baratangense
NCBI taxonomy Id: 631454
Other names: L. baratangense AMV1, Lutibaculum baratangense AMV1, Phyllobacteriaceae bacterium AMV1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.