STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N177_2599Putative transcriptional regulatory protein, LacI family. (340 aa)    
Predicted Functional Partners:
N177_1330
Phosphocarrier protein, nitrogen regulation associated.
 
 
 
 0.968
N177_2700
Glutamate synthase [NADPH] large chain.
    
 
 0.964
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
   0.917
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
   0.916
pheT
Phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
    
   0.914
mgsA
2-dehydro-3-deoxygluconate kinase; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate.
 
 
 0.832
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
 0.825
N177_0259
Ribose ABC transport system, permease protein RbsC; TCDB 3.A.1.2.1; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.804
N177_0265
Putative Xylose regulator from LacI family.
 
 
 0.793
N177_3725
Trehalose synthase.
  
 
 0.783
Your Current Organism:
Lutibaculum baratangense
NCBI taxonomy Id: 631454
Other names: L. baratangense AMV1, Lutibaculum baratangense AMV1, Phyllobacteriaceae bacterium AMV1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.