STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N177_2793Oxidoreductase, FAD-dependent. (428 aa)    
Predicted Functional Partners:
N177_2330
Sarcosine oxidase alpha subunit.
 
 0.975
N177_3967
Sarcosine oxidase alpha subunit.
 
 0.974
N177_2700
Glutamate synthase [NADPH] large chain.
  
 
 0.806
N177_2917
Glutamine synthetase family protein.
 
 
  0.651
N177_3982
Glutamine synthetase family protein.
 
 
  0.651
N177_3966
Sarcosine oxidase delta subunit.
 
  0.608
N177_0330
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
 0.602
N177_2915
Omega-amino acid--pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
     0.597
N177_2919
Glutamine synthetase family protein.
 
 
  0.596
N177_0227
Fe-S protein.
     
 0.592
Your Current Organism:
Lutibaculum baratangense
NCBI taxonomy Id: 631454
Other names: L. baratangense AMV1, Lutibaculum baratangense AMV1, Phyllobacteriaceae bacterium AMV1
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