STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N177_3069Chloromuconate cycloisomerase. (370 aa)    
Predicted Functional Partners:
N177_3082
Hypothetical protein; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.825
N177_3070
Succinyl-CoA ligase [ADP-forming] beta chain.
       0.773
N177_3071
Succinyl-CoA ligase [ADP-forming] alpha chain.
       0.773
N177_3072
Protein of unknown function DUF1468.
       0.773
N177_3073
Tricarboxylate transport membrane protein TctA.
       0.773
N177_1481
Hypothetical protein; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.770
N177_2686
Muconate cycloisomerase.
  
     0.602
N177_3068
Hypothetical protein.
       0.601
N177_3078
Long-chain-fatty-acid--CoA ligase.
  
 
  0.581
N177_3074
Hydroxymethylglutaryl-CoA lyase.
     
 0.532
Your Current Organism:
Lutibaculum baratangense
NCBI taxonomy Id: 631454
Other names: L. baratangense AMV1, Lutibaculum baratangense AMV1, Phyllobacteriaceae bacterium AMV1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.