STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N177_3412Transport protein. (373 aa)    
Predicted Functional Partners:
N177_4142
PRC-barrel domain protein.
 
     0.613
N177_1935
Hypothetical protein.
  
     0.550
N177_0793
Hypothetical protein.
  
    0.516
N177_3165
Putative phytochrome/sensor histidine kinase.
  
    0.472
N177_1866
Putative chemotaxis methyltransferase protein.
  
     0.467
N177_3409
Glutamate Aspartate transport system permease protein GltJ; TCDB 3.A.1.3.4.
       0.460
N177_3410
Amino acid ABC transporter, permease protein.
       0.460
N177_3411
ABC-type polar amino acid transport system, ATPase component.
       0.460
N177_3384
Hypothetical protein.
 
     0.448
N177_1865
DNA-directed RNA polymerase specialized sigma subunit.
  
     0.427
Your Current Organism:
Lutibaculum baratangense
NCBI taxonomy Id: 631454
Other names: L. baratangense AMV1, Lutibaculum baratangense AMV1, Phyllobacteriaceae bacterium AMV1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.