STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N177_3445ABC transporter, ATP-binding protein. (249 aa)    
Predicted Functional Partners:
N177_3446
ABC-type antimicrobial peptide transport system, permease component.
 
 0.999
N177_2005
Lipoprotein releasing system transmembrane protein LolE.
 
 0.990
N177_3447
Hypothetical protein.
 
 
 0.979
N177_2866
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.935
N177_4171
Oligopeptide transport ATP-binding protein OppD; TCDB 3.A.1.5.1.
 
     
0.892
N177_1101
Molybdenum transport system permease protein ModB; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
   
 0.751
N177_1358
Putative ABC transporter, permease protein.
  
 
 0.688
N177_3598
Type I secretion outer membrane protein, TolC precursor.
   
 
 0.625
lolD
Lipoprotein releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
  
  
 
0.624
N177_1930
ABC-type tungstate transport system, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
  
 
0.599
Your Current Organism:
Lutibaculum baratangense
NCBI taxonomy Id: 631454
Other names: L. baratangense AMV1, Lutibaculum baratangense AMV1, Phyllobacteriaceae bacterium AMV1
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