STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N177_3783Formate dehydrogenase O beta subunit. (301 aa)    
Predicted Functional Partners:
N177_0194
Anaerobic dehydrogenase, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.986
N177_3784
Formate dehydrogenase O alpha subunit protein; Overlaps CDS with the same product name; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.977
N177_3782
Formate dehydrogenase O putative subunit.
 
 
 0.974
N177_3786
Formate dehydrogenase O alpha subunit protein; Overlaps CDS with the same product name.
 
 
 0.963
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
 
 0.926
N177_2413
Formate dehydrogenase -O, gamma subunit.
 
 0.907
N177_4003
Formate dehydrogenase -O, gamma subunit.
  
 0.888
N177_0243
Sulfite dehydrogenase cytochrome subunit SoxD.
   
  0.873
N177_0469
Cytochrome c2.
   
  0.873
N177_3060
Indolepyruvate ferredoxin oxidoreductase, alpha and betaprotein.
    
 0.863
Your Current Organism:
Lutibaculum baratangense
NCBI taxonomy Id: 631454
Other names: L. baratangense AMV1, Lutibaculum baratangense AMV1, Phyllobacteriaceae bacterium AMV1
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