STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N177_3789FAD dependent oxidoreductase. (393 aa)    
Predicted Functional Partners:
N177_2624
Electron transfer flavoprotein, beta subunit.
  
 
 0.941
N177_3791
Chalcone synthase.
 
  
 0.937
N177_2108
Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
  
 
 0.932
N177_3790
Hypothetical protein.
 
     0.927
N177_2480
Geranyltranstransferase (farnesyl-diphosphate synthase); Belongs to the FPP/GGPP synthase family.
  
 0.719
ubiA
4-hydroxybenzoate polyprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
  
 
 0.718
N177_3625
Phytoene synthase.
  
 
 0.711
N177_2625
Electron transfer flavoprotein, alpha subunit.
  
 
 0.673
N177_0712
NAD(P)H dehydrogenase (quinone).
    
 0.639
N177_3792
Metal-dependent hydrolases of the beta-lactamase superfamily III.
       0.610
Your Current Organism:
Lutibaculum baratangense
NCBI taxonomy Id: 631454
Other names: L. baratangense AMV1, Lutibaculum baratangense AMV1, Phyllobacteriaceae bacterium AMV1
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