STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N177_4091TRAP-type C4-dicarboxylate transport system, periplasmic component. (345 aa)    
Predicted Functional Partners:
N177_4093
TRAP-type C4-dicarboxylate transport system, large permease component.
 
    0.892
N177_4092
Tripartite ATP-independent periplasmic transporter, DctQ component.
 
    0.848
N177_0075
TRAP-type C4-dicarboxylate transport system, large permease component.
  
    0.771
N177_4088
N-carbamoylsarcosine amidase.
 
     0.751
N177_1253
TRAP dicarboxylate transporter, DctM subunit, unknown substrate 5.
  
    0.726
N177_0226
TRAP-type C4-dicarboxylate transport system, large permease component.
  
    0.706
N177_0447
TRAP-type C4-dicarboxylate transport system, large permease component.
  
    0.706
N177_0460
TRAP-type C4-dicarboxylate transport system, large permease component.
  
    0.690
N177_3015
TRAP-type C4-dicarboxylate transport system, large permease component.
  
    0.685
N177_3017
C4-dicarboxylate transport system C4-dicarboxylate-binding protein.
  
     0.659
Your Current Organism:
Lutibaculum baratangense
NCBI taxonomy Id: 631454
Other names: L. baratangense AMV1, Lutibaculum baratangense AMV1, Phyllobacteriaceae bacterium AMV1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.