STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ95140.1Conserved hypothetical protein; Localized in the cytoplasm. (149 aa)    
Predicted Functional Partners:
CAZ95141.1
Conserved hypothetical protein belonging to the DUF159 family; Localized in the cytoplasm; Belongs to the SOS response-associated peptidase family.
       0.773
topA2
DNA topoisomerase 1B relaxes supercoiled DNA. Modifies DNA topology by introducing ATP-independent reversible enzyme-linked breaks in the DNA phosphodiester backbone. This is accomplished by cleaving one strand of the DNA duplex and passing the intact complementary strand through the nick. Cleaves DNA after CCCTT sequence. This enzyme is closely related to the DNA topoisomerase 1B from Mimivirus; Belongs to the eukaryotic type I topoisomerase family; Localized in the cytoplasm; High confidence in function and specificity.
 
    0.700
CAZ96756.1
Conserved hypothetical protein; Localized in the cytoplasm.
  
     0.611
CAZ95142.1
Putative membrane protein; Contains a signal peptide cleaved between the residues 27 and 28 followed by a transmembrane segment; Possibly localized in the cytoplasmic membrane; Hypothetical protein.
 
    0.597
CAZ97219.1
Conserved hypothetical protein; Putatively localized in the cytoplasmic membrane via a transmembrane segment.
 
    0.586
katA2
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.581
CAZ95146.1
The sensor histidine kinase belongs to two-component signal transduction systems. It catalyzes the ATP dependent autophosphorylation of a conserved histidine in its phosphoacceptor domain and the signal dependent phosphorylation of a conserved aspartic acid present in the response regulator receiver domain; Contains two transmembrane segments and two N-terminal PAS/PAC domains involved in many signalling proteins where they are used as a signal sensor domain; Localized in the cytoplasmic membrane; Family membership.
 
   
 0.543
CAZ95148.1
The AraC-type transcriptional regulators are usually involved in the positive regulation of catabolic, metabolic and transport operons; Contains a C-terminal AraC-type HTH DNA-binding domain involved in the binding of the protein to the operator sequences in the DNA and a N-terminal domain presumed to interact with effector molecules and may be involved in dimerization; Localized in the cytoplasm; Family membership.
 
    0.538
CAZ97696.1
Conserved hypothetical protein; Probably localized in the cytoplasm.
 
     0.529
CAZ96755.1
Conserved hypothetical protein distantly related to the Auxin-responsive GH3-like proteins; Localized in the cytoplasm.
  
     0.484
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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